PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G036400.2
Common NameB456_011G036400, LOC105777710
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 404aa    MW: 45922.9 Da    PI: 4.9704
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G036400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.46.4e-35141052102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+ye+++d+++++++sws++ +sfvv+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +
  Gorai.011G036400.2  14 FLAKTYEMVDDPSTDSIVSWSASDKSFVVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFVRGQPH 95 
                         9********************999****************************************9998.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Gorai.011G036400.2  96 LLKNIHRRKP 105
                         *******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.81E-379103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-6510103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.5E-3911103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.4E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.9E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDDAQGSSSS LPPFLAKTYE MVDDPSTDSI VSWSASDKSF VVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFV RGQPHLLKNI HRRKPVHSHS MQSHLGQGAS  120
SLTESERQNL RDEIERLKNE KELLALELKR HEQERQGFQL QMRLLRERLQ NMERRQQIMM  180
SSVARVLQKP GVAINLTPQL ETNDRKRRLT RIAYLYDEAG IEDSQTGNSL ISRENVDSTS  240
LSNMEPFEQL ESSMVFWENA VHDFGQTNIQ HESNLELDES TSCAETPATS CIQLNIDARL  300
KSPGIDMNSE PALVVVSEPI TAKEQAAGTT APATTGVNDI FWEQFLTENP GSTDTQEVQS  360
ERKDSDASKN ESKPGDHGKF WWNTKNVNNL AEQMGHLTPA ERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-25910315120Heat shock factor protein 1
5d5u_B3e-25910324129Heat shock factor protein 1
5d5v_B3e-25910324129Heat shock factor protein 1
5d5v_D3e-25910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208DRKRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674150.0KR067415.1 Gossypium hirsutum HSF34 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456552.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_012456553.10.0PREDICTED: heat stress transcription factor A-4a-like
SwissprotO494031e-139HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A0D2RGG00.0A0A0D2RGG0_G
STRINGPOPTR_0011s06820.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-119heat shock transcription factor A4A
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]